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I have variable "c" and varibale "a". In "a" I have geogebra script.
If[a == 1000, SetValue[c, c=c+100], SetValue[c, c=c-100]]
It doesn't work.
The same question 
You can't use adssignments inside a command. The correct syntax is
If[a == 1000, SetValue[c, c+100], SetValue[c, c-100]]
or
SetValue[c, c + If[a == 1000, 100, -100]]
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